Trace back optimization for DNA sequence alignment using Viterbi algorithm
This paper presents two trace back design for DNA sequences alignment using Viterbi algorithm for Pair Hidden Markov Models (PairHMMs) and design optimization for reducing the utilizing design resources. The replacement of the dynamic matrix trace back determination with the Viterbi algorithm for Pa...
Published in: | International Journal of Simulation: Systems, Science and Technology |
---|---|
Main Author: | Saliman N.F.A.; Sabri N.D.A.; Al Junid S.A.M.; Halim A.K.; Abd Majid Z.; Md Tahir N. |
Format: | Article |
Language: | English |
Published: |
UK Simulation Society
2013
|
Online Access: | https://www.scopus.com/inward/record.uri?eid=2-s2.0-84963781053&doi=10.5013%2fIJSSST.a.14.06.06&partnerID=40&md5=b58cf398c889d6de33adc4c421cd318f |
Similar Items
-
Accelerating DNA Sequence Alignment using Altera DE2-115
by: Helal M.H.A.M.S.K.; Rusli F.H.; Azman A.H.; Halim A.K.; Razak A.H.A.; Mohideen S.K.; Junid S.A.M.A.
Published: (2025) -
Design and analysis of 8-bit Smith Waterman based DNA sequence alignment accelerator's core on ASIC design flow
by: Halim A.K.; Majid Z.A.; Mansor M.A.; Al Junid S.A.M.; Mohamed S.; Khairudin N.; Yassin A.I.M.; Idros M.F.; Hassan S.L.M.
Published: (2010) -
Design and Analysis of Rotator Core for Short Reads Sequence Alignment Using Burrows-Wheeler Algorithm
by: Mahfoz M.Y.; Halim A.K.; Razak A.H.A.; Md Idros M.F.; Osman F.N.; Al Junid S.A.M.
Published: (2023) -
Three separated growth sequences of vertically-aligned carbon nanotubes on porous silicon: Field emission applications
by: Rouhi J.; Malayeri H.K.; Kakooei S.; Karimzadeh R.; Alrokayan S.; Khan H.; Mahmood M.R.
Published: (2018) -
Identifying sequence maps or locus to represent the genetic structure or genome standard of styling DNA in automotive design
by: Zainal Abidin S.; Othman A.; Shamsuddin Z.; Samsudin Z.; Hassan H.; Wan Mohamed W.A.
Published: (2016)